Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_1139PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: met:M446_2176 peptidase U6 penicillin-insensitive murein endopeptidase. (307 aa)    
Predicted Functional Partners:
Mnod_0216
Protein of unknown function DUF882; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; protein of unknown function DUF882; Peptidase M15A; KEGG: met:M446_3151 hypothetical protein.
  
     0.738
Mnod_7088
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: met:M446_6216 protein of unknown function DUF463 YcjX family protein.
  
     0.601
Mnod_1138
PFAM: PRC-barrel domain protein; KEGG: met:M446_2175 PRC-barrel domain-containing protein.
       0.599
Mnod_7087
PFAM: conserved hypothetical protein; KEGG: met:M446_6217 hypothetical protein.
  
     0.572
Mnod_0215
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_3150 peptidoglycan binding domain-containing protein.
  
     0.497
Mnod_1499
PFAM: ribonuclease T2; KEGG: met:M446_0680 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.487
Mnod_2851
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_2711 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.443
Mnod_5299
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_3106 peptidoglycan binding domain-containing protein.
  
     0.429
Mnod_4673
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_4662 peptidoglycan binding domain-containing protein.
  
     0.423
Mnod_4739
PFAM: protein of unknown function DUF1150; KEGG: met:M446_4229 hypothetical protein.
  
     0.422
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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