Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1188KEGG: met:M446_1823 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Mnod_7552
KEGG: met:M446_6821 hypothetical protein.
  
     0.682
Mnod_0715
KEGG: met:M446_1120 hypothetical protein.
 
     0.547
Mnod_7553
PFAM: protein of unknown function DUF1469; KEGG: met:M446_6820 hypothetical protein.
  
     0.487
Mnod_0307
KEGG: met:M446_2298 hypothetical protein.
  
     0.481
Mnod_4564
KEGG: met:M446_3051 hypothetical protein.
  
     0.481
Mnod_7554
KEGG: met:M446_6819 hypothetical protein.
  
     0.436
Mnod_2349
KEGG: met:M446_2989 putative cytochrome c oxidase subunit III protein.
  
     0.424
Mnod_0425
KEGG: met:M446_3595 hypothetical protein.
  
     0.410
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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