Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1212PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_3643 response regulator receiver protein. (398 aa)    
Predicted Functional Partners:
Mnod_1210
PFAM: inner-membrane translocator; KEGG: met:M446_3641 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.959
Mnod_1211
PFAM: inner-membrane translocator; KEGG: met:M446_3642 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.957
Mnod_1209
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3640 ABC transporter related.
 
    0.954
Mnod_1208
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3639 ABC transporter related.
 
    0.942
Mnod_1207
PFAM: Cupin domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: met:M446_3638 cupin 2 domain-containing protein.
 
     0.865
Mnod_1206
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: met:M446_3637 monooxygenase FAD-binding.
 
    0.808
Mnod_1242
PFAM: inner-membrane translocator; KEGG: met:M446_1977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.788
Mnod_3426
PFAM: inner-membrane translocator; KEGG: bja:blr3184 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.703
Mnod_5329
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_0777 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.702
Mnod_6585
PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_6491 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.695
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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