Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1215Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: met:M446_1825 arginase; Belongs to the arginase family. (309 aa)    
Predicted Functional Partners:
Mnod_1216
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: met:M446_1826 ornithine cyclodeaminase.
 
  
 0.995
Mnod_1649
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: met:M446_0446 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.929
Mnod_0286
PFAM: Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: mrd:Mrad2831_4404 ornithine decarboxylase.
  
 
 0.924
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.923
ureB
TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region; KEGG: met:M446_2213 urease, gamma subunit; Belongs to the urease beta subunit family.
    
  0.921
ureC
TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; Amidohydrolase 3; KEGG: met:M446_2211 urease, alpha subunit.
    
 0.917
argJ
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.916
Mnod_7150
PFAM: amidinotransferase; KEGG: met:M446_6335 non-specific serine/threonine protein kinase.
    
 0.913
Mnod_2875
TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: met:M446_3737 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
  
 
 0.907
Mnod_3650
TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rec:RHECIAT_PC0000539 acetylornithine deacetylase protein.
  
 
 0.907
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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