Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1224PFAM: Dimethylmenaquinone methyltransferase; KEGG: met:M446_1837 dimethylmenaquinone methyltransferase. (226 aa)    
Predicted Functional Partners:
Mnod_1264
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: met:M446_1643 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
     
  0.900
Mnod_2852
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: met:M446_2713 thiamine pyrophosphate binding domain-containing protein.
     
  0.900
Mnod_3747
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mrd:Mrad2831_0336 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
     
  0.900
Mnod_5446
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: met:M446_0238 acetolactate synthase, small subunit.
     
  0.900
Mnod_5448
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: met:M446_0239 acetolactate synthase, large subunit, biosynthetic type.
     
  0.900
Mnod_6728
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: met:M446_6522 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
     
  0.900
Mnod_1225
PFAM: electron transport protein SCO1/SenC; KEGG: met:M446_1125 electron transport protein SCO1/SenC.
       0.664
Mnod_1226
KEGG: met:M446_1126 selenium-binding protein, putative.
       0.546
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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