Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1241PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_1976 extracellular ligand-binding receptor. (406 aa)    
Predicted Functional Partners:
Mnod_1242
PFAM: inner-membrane translocator; KEGG: met:M446_1977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.968
Mnod_1243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_1978 ABC transporter related.
 
    0.901
Mnod_1244
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_1979 ABC transporter related.
 
  
 0.872
Mnod_3750
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG.
 
  
 0.727
Mnod_1162
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_1796 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.699
Mnod_5329
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_0777 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.688
Mnod_6585
PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_6491 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.641
Mnod_1248
KEGG: met:M446_1984 hypothetical protein.
 
     0.638
Mnod_1210
PFAM: inner-membrane translocator; KEGG: met:M446_3641 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.616
Mnod_1250
PFAM: ApbE family lipoprotein; KEGG: met:M446_1986 hypothetical protein.
 
     0.606
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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