Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Mnod_1267PFAM: PRC-barrel domain protein; KEGG: met:M446_1648 PRC-barrel domain-containing protein. (211 aa)    
Predicted Functional Partners:
Mnod_7367
PFAM: PRC-barrel domain protein; KEGG: met:M446_6618 PRC-barrel domain-containing protein.
  
     0.615
Mnod_1266
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1647 binding-protein-dependent transport systems inner membrane component.
       0.614
Mnod_1265
PFAM: extracellular solute-binding protein family 1; KEGG: met:M446_1646 extracellular solute-binding protein.
       0.608
Mnod_4399
PFAM: response regulator receiver; Sigma-70 region 4 type 2; KEGG: met:M446_2725 response regulator receiver protein.
 
    0.598
Mnod_1138
PFAM: PRC-barrel domain protein; KEGG: met:M446_2175 PRC-barrel domain-containing protein.
 
     0.558
Mnod_6531
PFAM: HWE histidine kinase; KEGG: met:M446_5922 signal transduction histidine kinase.
  
     0.536
Mnod_1316
PFAM: PRC-barrel domain protein; KEGG: met:M446_0931 PRC-barrel domain-containing protein.
 
     0.510
Mnod_5905
KEGG: met:M446_5290 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
     0.507
Mnod_1268
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: met:M446_1649 acyl-CoA dehydrogenase domain-containing protein.
       0.504
Mnod_3464
PFAM: PRC-barrel domain protein; KEGG: met:M446_2822 PRC-barrel domain-containing protein.
 
     0.489
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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