Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Mnod_1319PFAM: Protein of unknown function DUF1826; KEGG: gbe:GbCGDNIH1_0784 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Mnod_1318
PFAM: cobalamin synthesis protein P47K; KEGG: mex:Mext_2707 cobalamin synthesis protein P47K.
 
  
 0.879
Mnod_6048
PFAM: cell wall hydrolase/autolysin; KEGG: met:M446_5842 N-acetylmuramoyl-L-alanine amidase.
   
    0.665
Mnod_1091
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: met:M446_2119 cobalamin synthesis protein P47K.
 
  
 0.635
Mnod_5733
KEGG: pde:Pden_1338 cobalamin synthesis protein, P47K.
 
  
 0.507
Mnod_3327
TIGRFAM: ribosomal protein L31; KEGG: met:M446_4329 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.458
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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