Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_1321PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_5752 TonB-dependent receptor. (724 aa)    
Predicted Functional Partners:
Mnod_1322
PFAM: periplasmic binding protein; KEGG: dac:Daci_5751 periplasmic binding protein.
 
  
 0.900
Mnod_1323
PFAM: transport system permease protein; KEGG: dac:Daci_5750 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.894
Mnod_1324
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_5749 ABC transporter related.
 
   
 0.834
Mnod_1320
PFAM: Methyltransferase type 11; KEGG: dge:Dgeo_2351 methyltransferase type 11.
       0.791
Mnod_1397
TIGRFAM: TonB family protein; KEGG: met:M446_0855 TonB family protein.
   
 
 0.789
Mnod_4435
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: met:M446_3388 protein TolA.
   
 
 0.789
Mnod_0556
KEGG: bid:Bind_3695 proprotein convertase P.
    
   0.670
Mnod_1592
PFAM: Collagen triple helix repeat; KEGG: met:M446_0538 triple helix repeat-containing collagen.
    
   0.670
Mnod_2610
PFAM: Collagen triple helix repeat; KEGG: hypothetical protein; K06237 collagen, type IV, alpha.
    
   0.670
Mnod_4075
KEGG: oan:Oant_0244 hypothetical protein.
    
   0.670
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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