Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1323PFAM: transport system permease protein; KEGG: dac:Daci_5750 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (326 aa)    
Predicted Functional Partners:
Mnod_1324
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_5749 ABC transporter related.
 
 
 0.992
Mnod_1322
PFAM: periplasmic binding protein; KEGG: dac:Daci_5751 periplasmic binding protein.
 
 
 0.984
Mnod_2736
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpo:Mpop_4301 ABC transporter related.
 
 
 0.974
Mnod_1321
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_5752 TonB-dependent receptor.
 
   
 0.894
Mnod_2734
PFAM: periplasmic binding protein; KEGG: mex:Mext_3842 periplasmic binding protein.
 
 
 0.868
Mnod_1320
PFAM: Methyltransferase type 11; KEGG: dge:Dgeo_2351 methyltransferase type 11.
       0.773
Mnod_1325
Hypothetical protein.
       0.513
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
      
 0.424
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.410
Mnod_2864
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.406
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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