Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1330KEGG: met:M446_0916 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SMART: Nidogen extracellular domain protein. (1122 aa)    
Predicted Functional Partners:
Mnod_0006
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spe:Spro_1016 TonB-dependent siderophore receptor.
    
 
 0.749
Mnod_1180
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpo:Mpop_4426 TonB-dependent receptor plug.
    
 
 0.749
Mnod_5735
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mrd:Mrad2831_0861 TonB-dependent receptor plug.
    
 
 0.749
Mnod_7219
PFAM: TROVE domain protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
  
     0.599
Mnod_5640
KEGG: LOC765687; hypothetical protein LOC765687.
  
     0.582
Mnod_1563
PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_0603 GDSL family lipase.
  
   
 0.561
Mnod_1397
TIGRFAM: TonB family protein; KEGG: met:M446_0855 TonB family protein.
    
 
 0.538
Mnod_4435
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: met:M446_3388 protein TolA.
    
 
 0.538
Mnod_5904
KEGG: met:M446_5306 hypothetical protein.
  
     0.534
Mnod_1592
PFAM: Collagen triple helix repeat; KEGG: met:M446_0538 triple helix repeat-containing collagen.
  
   
 0.496
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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