Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1361PFAM: regulatory protein TetR; KEGG: met:M446_0882 regulatory protein TetR. (247 aa)    
Predicted Functional Partners:
Mnod_0211
PFAM: ABC-1 domain protein; KEGG: met:M446_3146 hypothetical protein.
 
     0.765
Mnod_2326
Phasin; KEGG: met:M446_5741 phasin.
  
     0.631
Mnod_1680
KEGG: met:M446_4849 hypothetical protein.
  
     0.630
Mnod_5203
Phasin; TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: met:M446_2947 phasin.
  
     0.629
Mnod_7421
PFAM: Domain of unknown function DUF1849; KEGG: met:M446_6683 hypothetical protein.
 
     0.626
Mnod_5937
Phasin; TIGRFAM: phasin; KEGG: met:M446_5238 phasin.
  
     0.615
Mnod_4741
PFAM: glycosyl transferase group 1; KEGG: met:M446_4231 glycosyl transferase group 1.
  
     0.608
Mnod_6390
Phasin; KEGG: met:M446_5741 phasin.
  
     0.572
Mnod_1360
PFAM: MmgE/PrpD family protein; KEGG: met:M446_0883 MmgE/PrpD family protein.
       0.559
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.545
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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