Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1365PFAM: alpha/beta hydrolase fold; KEGG: met:M446_0880 alpha/beta hydrolase fold. (300 aa)    
Predicted Functional Partners:
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 0.825
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.688
Mnod_1363
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c3154 RNA polymerase sigma-70 factor, ECF subfamily.
       0.523
Mnod_1364
PFAM: YCII-related; KEGG: bra:BRADO1155 hypothetical protein.
       0.523
Mnod_0010
PFAM: protein of unknown function DUF29; KEGG: mrd:Mrad2831_1125 hypothetical protein.
  
 
  0.522
Mnod_6021
PFAM: Rieske [2Fe-2S] domain protein; KEGG: met:M446_5800 Rieske (2Fe-2S) domain-containing protein.
 
 
 0.493
Mnod_4413
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: met:M446_3408 acyl-CoA dehydrogenase domain-containing protein.
  
  0.465
Mnod_0771
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_1843 alpha/beta hydrolase fold.
  
   
 0.454
Mnod_1366
PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_0879 major facilitator transporter.
       0.412
Mnod_5961
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_5208 alpha/beta hydrolase fold.
  
   
 0.409
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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