Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1376PFAM: Protein of unknown function DUF1790; KEGG: met:M446_0854 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Mnod_1375
PFAM: protein of unknown function DUF526; KEGG: met:M446_0853 hypothetical protein.
 
     0.736
Mnod_5968
KEGG: met:M446_5200 hypothetical protein; Belongs to the UPF0335 family.
  
     0.646
Mnod_6741
PFAM: heat shock protein DnaJ domain protein; KEGG: met:M446_6495 heat shock protein DnaJ domain-containing protein.
  
     0.623
Mnod_0697
PFAM: protein of unknown function DUF1321; KEGG: met:M446_1093 hypothetical protein.
  
     0.600
Mnod_5564
PFAM: DNA polymerase III chi subunit HolC; KEGG: met:M446_5406 DNA polymerase III chi subunit HolC.
  
     0.584
Mnod_0998
PFAM: import inner membrane translocase subunit Tim44; KEGG: met:M446_1374 import inner membrane translocase subunit Tim44.
  
     0.576
Mnod_1608
TIGRFAM: double-strand break repair protein AddB; KEGG: met:M446_0491 double-strand break repair protein AddB.
  
     0.551
Mnod_4624
KEGG: met:M446_2605 hypothetical protein.
  
     0.547
Mnod_2963
KEGG: met:M446_1049 hypothetical protein.
  
     0.545
Mnod_0693
KEGG: met:M446_1097 hypothetical protein.
  
     0.514
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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