Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1407TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: met:M446_0831 TonB-dependent receptor plug. (705 aa)    
Predicted Functional Partners:
Mnod_1406
PFAM: PepSY-associated TM helix domain protein; KEGG: met:M446_0832 PepSY-associated TM helix domain-containing protein.
 
  
 0.965
Mnod_1180
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpo:Mpop_4426 TonB-dependent receptor plug.
  
  
 0.757
Mnod_5735
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mrd:Mrad2831_0861 TonB-dependent receptor plug.
  
  
 0.756
Mnod_1077
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: gox:GOX0559 putative hydroxylase.
 
  
 0.710
Mnod_0007
PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_4238 PepSY-associated TM helix.
 
  
 0.566
Mnod_0006
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spe:Spro_1016 TonB-dependent siderophore receptor.
  
  
0.488
Mnod_4627
KEGG: met:M446_2602 dihydrofolate reductase.
  
     0.478
Mnod_1660
PFAM: iron permease FTR1; KEGG: met:M446_0433 iron permease FTR1.
   
    0.460
Mnod_5851
TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; transferase hexapeptide repeat containing protein; KEGG: met:M446_5328 amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.425
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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