Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1463PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3884 putative dihydrodipicolinate synthase; Belongs to the DapA family. (306 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.968
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.952
Mnod_3264
PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: met:M446_2698 homoserine dehydrogenase.
  
 
 0.916
Mnod_1466
PFAM: type III effector Hrp-dependent outers; KEGG: mrd:Mrad2831_4643 hypothetical protein.
 
     0.789
Mnod_1465
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mrd:Mrad2831_4642 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
  
  
 0.782
Mnod_1464
PFAM: iron-containing alcohol dehydrogenase; KEGG: azc:AZC_0176 iron-containing alcohol dehydrogenase.
  
    0.760
Mnod_1467
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3060 major facilitator transporter.
       0.753
Mnod_5643
PFAM: dihydrodipicolinate synthetase; KEGG: mex:Mext_0696 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
   
 0.728
Mnod_1468
PFAM: FAD linked oxidase domain protein; KEGG: bja:blr3885 FAD dependent oxidoreductase.
  
    0.671
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.575
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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