STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1466PFAM: type III effector Hrp-dependent outers; KEGG: mrd:Mrad2831_4643 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Mnod_1465
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mrd:Mrad2831_4642 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.942
Mnod_1464
PFAM: iron-containing alcohol dehydrogenase; KEGG: azc:AZC_0176 iron-containing alcohol dehydrogenase.
 
     0.840
Mnod_1463
PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3884 putative dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.797
Mnod_1467
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3060 major facilitator transporter.
       0.775
Mnod_1468
PFAM: FAD linked oxidase domain protein; KEGG: bja:blr3885 FAD dependent oxidoreductase.
       0.687
Mnod_4654
PFAM: type III effector Hrp-dependent outers; KEGG: met:M446_2624 type III effector Hrp-dependent outers.
  
     0.626
Mnod_1469
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mrd:Mrad2831_4644 GntR domain-containing protein.
 
     0.613
Mnod_4650
PFAM: class II aldolase/adducin family protein; KEGG: met:M446_2628 class II aldolase/adducin family protein.
 
  
 0.501
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
 
     0.487
Mnod_4684
TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: met:M446_3265 galactarate dehydratase.
 
     0.462
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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