Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1468PFAM: FAD linked oxidase domain protein; KEGG: bja:blr3885 FAD dependent oxidoreductase. (487 aa)    
Predicted Functional Partners:
Mnod_0677
PFAM: FAD linked oxidase domain protein; KEGG: met:M446_1765 FAD linked oxidase domain-containing protein.
 
     0.720
Mnod_1464
PFAM: iron-containing alcohol dehydrogenase; KEGG: azc:AZC_0176 iron-containing alcohol dehydrogenase.
  
  
 0.701
Mnod_1465
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mrd:Mrad2831_4642 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
     
 0.691
Mnod_1466
PFAM: type III effector Hrp-dependent outers; KEGG: mrd:Mrad2831_4643 hypothetical protein.
       0.682
Mnod_1467
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3060 major facilitator transporter.
       0.682
Mnod_1463
PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3884 putative dihydrodipicolinate synthase; Belongs to the DapA family.
  
    0.671
Mnod_0460
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: met:M446_2007 electron transfer flavoprotein alpha/beta-subunit.
 
 
 0.583
Mnod_5227
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: met:M446_3267 respiratory-chain NADH dehydrogenase domain-containing protein.
   
 0.582
Mnod_0461
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: met:M446_2006 electron transfer flavoprotein alpha subunit.
 
 
 0.564
Mnod_1469
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mrd:Mrad2831_4644 GntR domain-containing protein.
  
  
 0.531
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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