STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1483PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: met:M446_0698 lytic transglycosylase catalytic. (760 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.576
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.526
Mnod_3621
ATPase FliI/YscN; KEGG: met:M446_3947 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase.
  
  
 0.523
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: met:M446_5153 flagellar hook-basal body complex protein FliE.
  
  
 0.523
Mnod_5136
PFAM: Sporulation domain protein; Lytic transglycosylase catalytic; KEGG: met:M446_4519 lytic transglycosylase catalytic.
 
   
 0.508
Mnod_4635
KEGG: met:M446_2592 hypothetical protein.
  
     0.501
Mnod_3535
PFAM: Lytic transglycosylase catalytic; KEGG: mpo:Mpop_5452 hypothetical protein.
  
     0.475
Mnod_2310
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: met:M446_4184 flagellar basal body FlaE domain-containing protein.
  
  
 0.465
Mnod_5864
KEGG: met:M446_5368 hypothetical protein.
  
     0.460
Mnod_4715
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_4200 flagellar motor switch protein FliM.
  
  
 0.455
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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