Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1504PFAM: histone deacetylase superfamily; KEGG: met:M446_0674 histone deacetylase superfamily protein. (341 aa)    
Predicted Functional Partners:
Mnod_7561
KEGG: met:M446_6826 AAA family ATPase, CDC48 subfamily protein; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
 
 
 0.866
Mnod_5293
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: met:M446_3100 cytochrome c class I.
   
 0.806
Mnod_5289
PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_3098 Sel1 domain-containing protein.
   
 0.797
cobB-2
PFAM: Silent information regulator protein Sir2; KEGG: met:M446_5854 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
 0.788
Mnod_1390
SMART: WD-40 repeat protein; KEGG: met:M446_0862 WD-40 repeat-containing protein.
   
 0.779
Mnod_0377
PFAM: amine oxidase; KEGG: met:M446_2233 amine oxidase.
   
 0.770
Mnod_4579
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: met:M446_3036 amine oxidase.
   
 0.770
Mnod_2090
PFAM: Ankyrin; KEGG: met:M446_4648 ankyrin.
   
 0.761
Mnod_2960
Hypothetical protein.
   
 0.761
Mnod_2267
Hypothetical protein; KEGG: mes:Meso_1199 helicase-like.
   
 0.751
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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