Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_1542PFAM: protein of unknown function UPF0047; KEGG: met:M446_0627 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Mnod_1540
KEGG: met:M446_0629 putative mRNA 3-end processing factor.
       0.853
Mnod_1541
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: met:M446_0628 ATP dependent DNA ligase.
       0.853
Mnod_1539
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_0630 methyltransferase type 12.
       0.737
Mnod_3944
PFAM: protein of unknown function DUF419; KEGG: abm:ABSDF0715 hypothetical protein.
  
  
 0.701
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
     
 0.510
Mnod_1543
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: met:M446_0625 two component LuxR family transcriptional regulator.
       0.479
Mnod_4918
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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