Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1590Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_2776 methyltransferase type 11. (279 aa)    
Predicted Functional Partners:
Mnod_1588
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: met:M446_2777 AraC family transcriptional regulator.
 
     0.530
Mnod_0753
KEGG: met:M446_4708 putative PAS/PAC sensor protein.
  
     0.515
Mnod_2699
PFAM: PAS fold-4 domain protein; KEGG: met:M446_4708 putative PAS/PAC sensor protein.
  
     0.471
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.431
Mnod_6118
PFAM: Domain of unknown function DUF1801; KEGG: mes:Meso_0627 hypothetical protein.
  
     0.425
Mnod_1589
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rsh:Rsph17029_4041 hypothetical protein.
       0.416
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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