Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1592PFAM: Collagen triple helix repeat; KEGG: met:M446_0538 triple helix repeat-containing collagen. (320 aa)    
Predicted Functional Partners:
Mnod_1321
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_5752 TonB-dependent receptor.
    
   0.670
Mnod_3763
PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; KEGG: met:M446_4980 hypothetical protein.
 
  
 0.623
Mnod_4175
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: met:M446_4440 peptidase S1 and S6 chymotrypsin/Hap.
  
     0.565
Mnod_5176
PFAM: Polynucleotide adenylyltransferase region; KEGG: met:M446_4475 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.558
Mnod_7219
PFAM: TROVE domain protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
  
     0.547
Mnod_5640
KEGG: LOC765687; hypothetical protein LOC765687.
  
     0.542
Mnod_1563
PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_0603 GDSL family lipase.
  
   0.528
Mnod_6504
TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: met:M446_5887 protease Do; Belongs to the peptidase S1C family.
 
 
 0.519
atpE
H+transporting two-sector ATPase C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.518
Mnod_1330
KEGG: met:M446_0916 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SMART: Nidogen extracellular domain protein.
  
   
 0.496
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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