Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1620PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0478 ABC transporter related. (317 aa)    
Predicted Functional Partners:
Mnod_0021
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: met:M446_0018 substrate-binding region of ABC-type glycine betaine transport system.
 
 0.997
Mnod_0019
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0016 binding-protein-dependent transport systems inner membrane component.
 
 0.995
Mnod_0020
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0017 binding-protein-dependent transport systems inner membrane component.
 
 0.995
Mnod_1619
KEGG: met:M446_0479 hypothetical protein.
       0.824
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.576
Mnod_3407
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mex:Mext_3732 binding-protein-dependent transport systems inner membrane component.
  
  
 0.552
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
       0.535
Mnod_3406
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mex:Mext_3733 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.433
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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