Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1649PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: met:M446_0446 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (388 aa)    
Predicted Functional Partners:
Mnod_1215
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: met:M446_1825 arginase; Belongs to the arginase family.
  
 
 0.929
Mnod_1216
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: met:M446_1826 ornithine cyclodeaminase.
  
 
 0.920
Mnod_0286
PFAM: Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: mrd:Mrad2831_4404 ornithine decarboxylase.
    
 0.919
Mnod_2912
PFAM: aminotransferase class-III; KEGG: azc:AZC_2031 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.905
Mnod_2920
PFAM: GCN5-related N-acetyltransferase; KEGG: met:M446_2666 GCN5-related N-acetyltransferase.
    
 0.905
Mnod_1646
PFAM: homospermidine synthase; KEGG: met:M446_0451 homospermidine synthase.
 
     0.707
Mnod_1648
PFAM: GCN5-related N-acetyltransferase; KEGG: met:M446_0447 GCN5-related N-acetyltransferase.
 
     0.675
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.594
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.548
Mnod_4996
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rle:RL2909 putative NAD(P)H dehydrogenase.
 
  
  0.488
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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