Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1679KEGG: met:M446_4850 hypoxia induced protein region. (61 aa)    
Predicted Functional Partners:
Mnod_6604
KEGG: met:M446_6067 hypothetical protein.
  
     0.739
Mnod_4722
KEGG: met:M446_4209 hypothetical protein.
  
     0.728
Mnod_4517
KEGG: met:M446_3666 hypothetical protein.
  
     0.711
Mnod_4533
KEGG: met:M446_3260 hypothetical protein.
  
     0.685
Mnod_7180
PFAM: Invasion associated locus B family protein; KEGG: met:M446_6313 invasion associated locus B family protein.
  
     0.683
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
  
     0.676
Mnod_6704
KEGG: met:M446_6185 hypothetical protein.
  
     0.670
Mnod_2806
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_2407 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.658
Mnod_0172
KEGG: met:M446_4587 hypothetical protein.
  
     0.656
Mnod_4770
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_4260 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.652
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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