Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1687PFAM: conserved hypothetical protein; KEGG: met:M446_4843 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Mnod_1686
KEGG: met:M446_4844 hypothetical protein.
 
     0.806
Mnod_1690
KEGG: met:M446_4839 hypothetical protein.
 
     0.799
Mnod_7566
KEGG: met:M446_6830 hypothetical protein.
  
   
 0.777
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
  
   
 0.763
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.746
Mnod_3620
TIGRFAM: flagellar export protein FliJ; KEGG: met:M446_3948 flagellar export protein FliJ.
  
     0.711
Mnod_5963
PFAM: protein of unknown function DUF1036; KEGG: met:M446_5206 hypothetical protein.
  
     0.708
Mnod_0172
KEGG: met:M446_4587 hypothetical protein.
  
     0.695
Mnod_2807
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_2406 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.694
Mnod_4770
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_4260 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.693
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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