Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1711PFAM: protein of unknown function DUF427; KEGG: met:M446_4812 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Mnod_1710
PFAM: Methyltransferase type 11; KEGG: met:M446_4813 methyltransferase type 11.
       0.853
Mnod_1709
KEGG: rpe:RPE_4243 hypothetical protein.
       0.642
Mnod_0355
TIGRFAM: methyltransferase; KEGG: met:M446_2254 hypothetical protein.
 
     0.608
Mnod_1708
KEGG: met:M446_4814 phosphoribosyltransferase.
       0.581
Mnod_0356
PFAM: protein of unknown function DUF323; KEGG: met:M446_2253 hypothetical protein.
 
     0.477
Mnod_4408
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: met:M446_3414 haloacid dehalogenase, type II.
  
     0.418
Mnod_6723
PFAM: Glutathione S-transferase domain; KEGG: met:M446_6528 glutathione S-transferase domain-containing protein.
  
     0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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