Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Mnod_17194Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)    
Predicted Functional Partners:
Mnod_0287
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: met:M446_2324 pyruvate ferredoxin/flavodoxin oxidoreductase.
  
 
 0.883
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.815
Mnod_1720
PFAM: RNA-binding S4 domain protein; KEGG: met:M446_4803 RNA-binding S4 domain-containing protein.
       0.693
Mnod_1721
PFAM: helicase domain protein; KEGG: met:M446_4802 helicase domain-containing protein.
       0.686
Mnod_5270
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3079 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
     
 0.533
Mnod_3398
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: mpo:Mpop_4001 NADH:flavin oxidoreductase/NADH oxidase.
  
 
 0.467
Mnod_3391
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_3738 sarcosine oxidase alpha subunit family protein.
     
 0.452
Mnod_6438
MOSC domain containing protein; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; 3-alpha domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; KEGG: rle:pRL110471 putative flavoprotein/ferredoxin.
     
 0.450
Mnod_5850
KEGG: met:M446_5111 hypothetical protein.
  
    0.449
Mnod_1172
TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: met:M446_1811 glutamate synthase, NADH/NADPH, small subunit.
  
 
 0.439
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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