Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1737PFAM: Peptidoglycan-binding domain 1 protein; KEGG: met:M446_0401 peptidoglycan binding domain-containing protein. (466 aa)    
Predicted Functional Partners:
Mnod_0107
KEGG: met:M446_4743 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.642
Mnod_5013
Hypothetical protein; KEGG: mex:Mext_2172 ATPase central domain-containing protein.
    
 0.634
Mnod_1479
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 
 0.618
Mnod_1311
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 
 0.615
Mnod_5195
KEGG: met:M446_4457 hypothetical protein.
  
     0.614
Mnod_0519
KEGG: met:M446_2036 TRAP-type uncharacterized transport system periplasmic component-like protein.
  
     0.613
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.595
Mnod_4667
PFAM: O-antigen polymerase; KEGG: met:M446_4779 O-antigen polymerase.
  
     0.587
Mnod_7181
KEGG: met:M446_6312 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein.
  
    0.578
Mnod_4360
KEGG: mex:Mext_4583 polysaccharide biosynthesis protein.
  
     0.576
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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