STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1744PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: met:M446_5434 lysine exporter protein LysE/YggA. (204 aa)    
Predicted Functional Partners:
Mnod_1742
KEGG: met:M446_5432 hypothetical protein.
       0.773
Mnod_1743
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_5433 ABC transporter related.
       0.773
Mnod_1745
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_5435 ABC transporter related.
       0.773
Mnod_1746
PFAM: inner-membrane translocator; KEGG: met:M446_5436 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Mnod_1747
PFAM: inner-membrane translocator; KEGG: met:M446_5437 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Mnod_1741
PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_5431 extracellular ligand-binding receptor.
   
   0.534
Mnod_1748
PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; KEGG: met:M446_5438 carbon monoxide dehydrogenase subunit G.
       0.471
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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