Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Mnod_1791TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: met:M446_2024 general secretion pathway protein D; Belongs to the bacterial secretin family. (784 aa)    
Predicted Functional Partners:
Mnod_1793
PFAM: type II secretion system protein; KEGG: met:M446_2022 type II secretion system protein.
 
  
 0.937
Mnod_1794
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: met:M446_2021 general secretion pathway protein G.
 
  
 0.930
Mnod_1787
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: met:M446_2028 type II secretion system protein E.
 
  
 0.917
Mnod_1788
PFAM: Fimbrial assembly family protein; KEGG: met:M446_2027 fimbrial assembly family protein.
 
   
 0.906
Mnod_1786
KEGG: met:M446_2029 putative general secretion pathway protein K.
 
  
 0.899
Mnod_1792
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2023 peptidase A24A prepilin type IV.
 
  
 0.846
Mnod_5533
TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: met:M446_5150 flagellar biosynthetic protein FlhB.
  
 
 0.827
Mnod_6060
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.781
Mnod_1307
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: met:M446_0921 adenylate/guanylate cyclase.
  
  
 0.764
Mnod_3044
KEGG: bja:blr3597 hypothetical protein.
  
  
 0.762
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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