Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1792PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2023 peptidase A24A prepilin type IV. (192 aa)    
Predicted Functional Partners:
Mnod_1793
PFAM: type II secretion system protein; KEGG: met:M446_2022 type II secretion system protein.
 
  
 0.964
Mnod_1794
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: met:M446_2021 general secretion pathway protein G.
 
  
 0.908
Mnod_1786
KEGG: met:M446_2029 putative general secretion pathway protein K.
 
   
 0.849
Mnod_1791
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: met:M446_2024 general secretion pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.846
Mnod_1788
PFAM: Fimbrial assembly family protein; KEGG: met:M446_2027 fimbrial assembly family protein.
 
  
 0.830
Mnod_1787
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: met:M446_2028 type II secretion system protein E.
 
 
 0.816
Mnod_3313
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: met:M446_4345 DNA protecting protein DprA.
  
  
 0.794
Mnod_5711
KEGG: abo:ABO_0763 hypothetical protein.
  
  
 0.794
Mnod_4496
KEGG: met:M446_4563 hypothetical protein.
   
  
 0.703
Mnod_5921
PFAM: helix-hairpin-helix motif; KEGG: met:M446_5276 helix-hairpin-helix DNA-binding motif-containing protein.
   
  
 0.703
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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