Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1806PFAM: protein of unknown function DUF861 cupin_3; KEGG: met:M446_5486 protein of unknown function DUF861 cupin_3. (150 aa)    
Predicted Functional Partners:
Mnod_4419
KEGG: met:M446_3402 tRNA synthetase class II (G H P and S).
 
     0.771
Mnod_4418
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: met:M446_3403 acyl-CoA dehydrogenase type 2.
  
     0.762
Mnod_5867
KEGG: met:M446_5371 putative acyl-CoA N-acyltransferase related protein.
  
     0.620
Mnod_1805
PFAM: aminotransferase class IV; KEGG: met:M446_5485 aminotransferase class IV.
 
     0.616
Mnod_6726
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_6525 AMP-dependent synthetase and ligase.
  
     0.601
Mnod_1253
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: met:M446_1996 response regulator receiver sensor signal transduction histidine kinase.
  
     0.598
Mnod_0283
KEGG: rpb:RPB_0417 autoinducer synthesis protein.
  
     0.548
Mnod_4936
KEGG: met:M446_2648 hypothetical protein.
  
     0.475
Mnod_3659
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: mex:Mext_1446 regulatory protein MarR.
  
     0.472
Mnod_4514
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: met:M446_4580 phage shock protein A, PspA.
  
    0.459
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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