Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_1883PFAM: protein of unknown function DUF1624; KEGG: met:M446_0380 hypothetical protein. (334 aa)    
Predicted Functional Partners:
Mnod_0698
PFAM: Abortive infection protein; KEGG: met:M446_1092 abortive infection protein.
 
    0.744
Mnod_1882
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: met:M446_0381 cold-shock DNA-binding domain-containing protein.
       0.541
Mnod_4551
KEGG: met:M446_3065 porin opacity type.
  
     0.506
Mnod_1881
PFAM: protein of unknown function DUF192; KEGG: met:M446_0382 hypothetical protein.
       0.481
Mnod_5256
Porin; KEGG: met:M446_3292 porin.
  
    0.478
Mnod_1624
Porin; KEGG: met:M446_4335 porin.
  
    0.468
Mnod_2044
Porin; PFAM: porin; KEGG: met:M446_4335 porin.
  
    0.463
Mnod_0705
KEGG: met:M446_2059 hypothetical protein.
  
     0.461
Mnod_4550
Porin; PFAM: porin; KEGG: met:M446_3066 porin opacity type.
  
     0.456
Mnod_5558
KEGG: met:M446_5326 hypothetical protein.
 
     0.455
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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