Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1889KEGG: met:M446_0374 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Mnod_1890
PFAM: protein of unknown function DUF599; KEGG: met:M446_0373 hypothetical protein.
       0.853
Mnod_1891
PFAM: acylphosphatase; KEGG: met:M446_0372 acylphosphatase.
       0.842
Mnod_1059
TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: met:M446_1429 pyridoxal kinase; Belongs to the pyridoxine kinase family.
  
     0.658
Mnod_1758
PFAM: Exopolysaccharide synthesis ExoD; KEGG: met:M446_5451 exopolysaccharide synthesis ExoD.
  
     0.501
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
       0.488
Mnod_1656
KEGG: mpo:Mpop_3333 radical SAM domain protein.
 
     0.460
Mnod_1519
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: met:M446_0656 hypothetical protein.
  
     0.426
Mnod_6132
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: met:M446_0656 hypothetical protein.
  
     0.426
Mnod_1090
KEGG: met:M446_2118 hypothetical protein.
  
     0.418
Mnod_0452
KEGG: met:M446_2015 hypothetical protein.
  
     0.402
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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