Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Mnod_1940KEGG: met:M446_0322 phytanoyl-CoA dioxygenase. (355 aa)    
Predicted Functional Partners:
Mnod_1939
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0323 capsule polysaccharide biosynthesis protein.
 
     0.609
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
 
 
 0.579
Mnod_1941
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0321 capsule polysaccharide biosynthesis protein.
 
     0.531
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
      
 0.449
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.436
Mnod_1658
KEGG: met:M446_6013 capsule polysaccharide export protein-like protein.
 
     0.425
Mnod_1852
PFAM: lipopolysaccharide biosynthesis protein; KEGG: met:M446_4871 capsule polysaccharide export protein-like protein.
 
     0.423
Mnod_1654
PFAM: ABC-2 type transporter; KEGG: met:M446_3810 ABC-2 type transporter.
 
     0.418
Mnod_2049
KEGG: met:M446_6013 capsule polysaccharide export protein-like protein.
 
     0.410
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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