Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1958KEGG: met:M446_3820 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase. (739 aa)    
Predicted Functional Partners:
Mnod_1957
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: met:M446_3819 HlyD family type I secretion membrane fusion protein.
 
 
 0.985
Mnod_0405
KEGG: met:M446_0093 membrane-fusion protein.
 
 
 0.754
Mnod_1956
PFAM: glycosyl transferase group 1; KEGG: met:M446_3818 glycosyl transferase group 1.
  
    0.746
Mnod_2542
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: met:M446_3318 HlyD family type I secretion membrane fusion protein.
 
 
 0.744
Mnod_6816
PFAM: Hemolysin-type calcium-binding region; KEGG: met:M446_1701 5'-nucleotidase domain-containing protein.
 
  
 0.715
Mnod_5716
PFAM: Hemolysin-type calcium-binding region; CHRD domain containing protein; KEGG: met:M446_1701 5'-nucleotidase domain-containing protein.
 
  
 0.704
Mnod_0800
PFAM: Hemolysin-type calcium-binding region; KEGG: psb:Psyr_3823 putative hemolysin-type calcium-binding region.
 
  
 0.700
Mnod_5874
PFAM: Hemolysin-type calcium-binding region; KEGG: psb:Psyr_3823 putative hemolysin-type calcium-binding region.
 
  
 0.700
Mnod_1569
PFAM: Hemolysin-type calcium-binding region; KEGG: met:M446_3007 hemolysin-type calcium-binding region.
 
  
 0.686
Mnod_6850
PFAM: Hemolysin-type calcium-binding region; KEGG: eba:ebA7184 hypothetical protein.
 
  
 0.686
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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