Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Co-expression
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[Homology]
Score
Mnod_1984PFAM: virulence-associated E family protein; KEGG: bja:bll5017 hypothetical protein. (509 aa)    
Predicted Functional Partners:
Mnod_1980
PFAM: VRR-NUC domain protein; KEGG: rpt:Rpal_2313 VRR-NUC domain protein.
 
     0.749
Mnod_1983
PFAM: Bifunctional DNA primase/polymerase; KEGG: swi:Swit_2196 P4 family phage/plasmid primase.
 
     0.713
Mnod_1974
TIGRFAM: phage regulatory protein, Rha family; PFAM: phage antirepressor protein; regulatory protein Rha family; KEGG: sgl:SG0739 hypothetical protein.
 
     0.639
Mnod_1978
Hypothetical protein.
       0.615
Mnod_1979
Hypothetical protein.
       0.615
Mnod_1981
Hypothetical protein.
       0.615
Mnod_1982
Hypothetical protein.
       0.615
Mnod_7593
SMART: AAA ATPase; KEGG: atc:AGR_L_1976 hypothetical protein.
  
    0.561
Mnod_2627
PFAM: VRR-NUC domain protein; KEGG: rpt:Rpal_3793 VRR-NUC domain protein.
  
     0.516
Mnod_1985
Hypothetical protein.
       0.484
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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