Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1996TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative. (473 aa)    
Predicted Functional Partners:
Mnod_1994
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
   
 0.949
Mnod_1998
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.
 
 
 0.906
Mnod_1992
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.899
Mnod_7329
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: pmy:Pmen_3970 HK97 family phage major capsid protein.
 
 
 0.878
Mnod_1993
Hypothetical protein; KEGG: nha:Nham_2021 phage terminase, small subunit, putative, P27.
  
  
 0.847
Mnod_7330
PFAM: peptidase S14 ClpP; KEGG: pmy:Pmen_3971 peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
    0.801
Mnod_2617
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.795
Mnod_4278
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
  
 0.795
Mnod_7332
PFAM: Terminase; KEGG: ppw:PputW619_1335 terminase.
 
   
 0.790
Mnod_2614
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
   
 0.789
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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