STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1997PFAM: peptidase S49; KEGG: aba:Acid345_3173 peptidase S49. (302 aa)    
Predicted Functional Partners:
Mnod_1993
Hypothetical protein; KEGG: nha:Nham_2021 phage terminase, small subunit, putative, P27.
       0.777
Mnod_1994
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
       0.777
Mnod_1996
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative.
       0.777
Mnod_1995
KEGG: ppu:PP_3880 hypothetical protein.
       0.773
Mnod_1991
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mrd:Mrad2831_2950 Crp/FNR family transcriptional regulator.
  
    0.520
Mnod_1992
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
       0.519
Mnod_1998
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.
       0.439
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.