STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCL3DCL3; KEGG: DCL3; dicer-like protein. (129 aa)    
Predicted Functional Partners:
Mnod_1998
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.
       0.586
Mnod_2000
KEGG: SNF2 superfamily protein.
       0.580
Mnod_2001
KEGG: smd:Smed_1332 phage conserved hypothetical protein, phiE125 gp8.
       0.518
Mnod_2002
PFAM: putative head-tail adaptor protein; KEGG: rsp:RSP_6246 bacteriophage head-tail adaptor.
       0.518
Mnod_2003
TIGRFAM: phage protein, HK97 gp10 family; KEGG: smd:Smed_1326 phage protein, HK97 GP10 family.
       0.518
Mnod_2004
Hypothetical protein.
       0.518
Mnod_2005
KEGG: smd:Smed_1324 hypothetical protein.
       0.518
Mnod_2006
KEGG: mes:Meso_1897 hypothetical protein.
       0.518
Mnod_2007
Hypothetical protein.
       0.431
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.