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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2002PFAM: putative head-tail adaptor protein; KEGG: rsp:RSP_6246 bacteriophage head-tail adaptor. (109 aa)    
Predicted Functional Partners:
Mnod_2001
KEGG: smd:Smed_1332 phage conserved hypothetical protein, phiE125 gp8.
  
 
 0.868
Mnod_2005
KEGG: smd:Smed_1324 hypothetical protein.
   
   0.812
Mnod_2004
Hypothetical protein.
       0.778
Mnod_2003
TIGRFAM: phage protein, HK97 gp10 family; KEGG: smd:Smed_1326 phage protein, HK97 GP10 family.
       0.773
Mnod_2006
KEGG: mes:Meso_1897 hypothetical protein.
       0.773
Mnod_2000
KEGG: SNF2 superfamily protein.
       0.686
Mnod_1998
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97.
  
 
 0.659
Mnod_2007
Hypothetical protein.
       0.628
Mnod_2009
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
   
 
 0.576
Mnod_2010
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
   
 
 0.576
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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