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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2012KEGG: met:M446_5975 gene transfer agent (GTA) like protein. (1300 aa)    
Predicted Functional Partners:
Mnod_2009
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
 
 
   0.960
Mnod_2010
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.960
Mnod_2011
TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: met:M446_5974 NlpC/P60 family phage cell wall peptidase.
 
     0.948
Mnod_2013
KEGG: mex:Mext_1417 hypothetical protein.
 
 
   0.944
Mnod_2601
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.832
Mnod_2602
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
 
 
   0.832
Mnod_4293
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
 
 
   0.832
Mnod_4294
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.832
Mnod_6571
PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein.
 
 
   0.832
Mnod_6572
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.832
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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