Mnod_2019 protein (Methylobacterium nodulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Mnod_2019

PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family. (235 aa)

Predicted Functional Partners:

Mnod_2022

0.680

Mnod_2020

0.603

Mnod_2021

0.566

Mnod_2023

0.487

Your Current Organism:

Methylobacterium nodulans

NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Mnod_2019	Mnod_2020	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	0.603
Mnod_2019	Mnod_2021	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	0.566
Mnod_2019	Mnod_2022	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	0.680
Mnod_2019	Mnod_2023	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	0.487
Mnod_2020	Mnod_2019	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	0.603
Mnod_2020	Mnod_2021	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	0.977
Mnod_2020	Mnod_2022	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	0.969
Mnod_2020	Mnod_2023	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	0.576
Mnod_2021	Mnod_2019	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	0.566
Mnod_2021	Mnod_2020	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	0.977
Mnod_2021	Mnod_2022	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	0.979
Mnod_2021	Mnod_2023	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	0.586
Mnod_2022	Mnod_2019	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	0.680
Mnod_2022	Mnod_2020	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	0.969
Mnod_2022	Mnod_2021	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	0.979
Mnod_2022	Mnod_2023	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	0.576
Mnod_2023	Mnod_2019	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	PFAM: regulatory protein TetR; KEGG: mpo:Mpop_3562 transcriptional regulator, TetR family.	0.487
Mnod_2023	Mnod_2020	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mex:Mext_1291 molybdopterin dehydrogenase FAD-binding.	0.576
Mnod_2023	Mnod_2021	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mpo:Mpop_3560 (2Fe-2S)-binding domain protein.	0.586
Mnod_2023	Mnod_2022	PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor.	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_3559 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.	0.576

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About