Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_2023PFAM: Extracellular ligand-binding receptor; KEGG: mex:Mext_1288 extracellular ligand-binding receptor. (415 aa)    
Predicted Functional Partners:
Mnod_2024
PFAM: inner-membrane translocator; KEGG: mpo:Mpop_3557 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.945
Mnod_2025
PFAM: inner-membrane translocator; KEGG: mpo:Mpop_3556 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.941
Mnod_2027
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpo:Mpop_3554 ABC transporter related.
 
    0.909
Mnod_2026
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpo:Mpop_3555 ABC transporter related.
 
    0.896
Mnod_3425
PFAM: inner-membrane translocator; KEGG: bja:blr3185 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.837
Mnod_3426
PFAM: inner-membrane translocator; KEGG: bja:blr3184 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.828
Mnod_1242
PFAM: inner-membrane translocator; KEGG: met:M446_1977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.824
Mnod_0066
PFAM: inner-membrane translocator; KEGG: met:M446_4764 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
    0.813
Mnod_3697
PFAM: inner-membrane translocator; KEGG: met:M446_4644 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.806
Mnod_1099
PFAM: inner-membrane translocator; KEGG: met:M446_2127 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.786
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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