STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2086TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: met:M446_4652 protocatechuate 3,4-dioxygenase, alpha subunit. (210 aa)    
Predicted Functional Partners:
Mnod_2087
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: met:M446_4651 protocatechuate 3,4-dioxygenase, beta subunit.
 
0.999
Mnod_7086
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: met:M446_6220 4-hydroxybenzoate 3-monooxygenase.
 
  
 0.988
Mnod_2084
PFAM: fumarate lyase; KEGG: met:M446_4654 fumarate lyase.
 
 
 0.985
Mnod_0757
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; 3-carboxy-ciscis-muconate cycloisomerase; KEGG: bja:bll7942 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.965
Mnod_2083
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: met:M446_4655 3-oxoadipate enol-lactonase.
 
  
 0.855
Mnod_2592
PFAM: intradiol ring-cleavage dioxygenase; KEGG: smd:Smed_4070 intradiol ring-cleavage dioxygenase.
  
   
 0.771
Mnod_0122
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: met:M446_4755 4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.725
Mnod_2085
PFAM: protein of unknown function DUF849; KEGG: met:M446_1332 hypothetical protein.
     
 0.710
Mnod_2372
TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: met:M446_1328 catechol 1,2-dioxygenase.
  
  
 0.687
Mnod_0748
PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bja:bll2679 dioxygenase.
  
  
 0.683
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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