Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2088PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: met:M446_4650 IclR family transcriptional regulator. (273 aa)    
Predicted Functional Partners:
Mnod_6621
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: met:M446_4911 IclR family transcriptional regulator.
  
     0.751
Mnod_2087
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: met:M446_4651 protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.654
Mnod_2086
TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: met:M446_4652 protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.647
Mnod_1632
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ajs:Ajs_0448 IclR family transcriptional regulator.
  
     0.619
Mnod_0227
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: met:M446_3170 IclR family transcriptional regulator.
  
     0.608
Mnod_0899
PFAM: Allophanate hydrolase subunit 1; KEGG: bcm:Bcenmc03_3056 allophanate hydrolase subunit 1.
  
    0.607
Mnod_1104
PFAM: Allophanate hydrolase subunit 1; KEGG: met:M446_2132 allophanate hydrolase subunit 1.
  
    0.607
Mnod_0900
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rso:RS05395 hypothetical protein.
  
    0.581
Mnod_1105
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: met:M446_2133 UreA amidolyase related protein.
  
    0.581
Mnod_2725
PFAM: NIPSNAP family containing protein; KEGG: bja:blr3671 hypothetical protein.
  
     0.506
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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