Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2242PFAM: major facilitator superfamily MFS_1; KEGG: mpo:Mpop_1884 major facilitator superfamily MFS_1. (444 aa)    
Predicted Functional Partners:
Mnod_2241
PFAM: protein of unknown function DUF156; KEGG: mpo:Mpop_1883 protein of unknown function DUF156.
 
    0.850
Mnod_4713
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: met:M446_4198 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.411
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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