Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2244Hypothetical protein; KEGG: met:M446_5531 transposase. (426 aa)    
Predicted Functional Partners:
Mnod_7603
KEGG: mrd:Mrad2831_6371 hypothetical protein.
 
     0.750
Mnod_2977
KEGG: rca:Rcas_3465 hypothetical protein.
  
     0.733
Mnod_6305
KEGG: rle:pRL70142 hypothetical protein.
  
    0.696
Mnod_4312
KEGG: met:M446_1477 hypothetical protein.
  
     0.666
Mnod_2879
PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: met:M446_3690 type III restriction protein res subunit.
  
     0.652
Mnod_4327
KEGG: oan:Oant_0704 integrase catalytic region.
  
     0.603
Mnod_0763
KEGG: met:M446_2052 heat repeat-containing PBS lyase.
  
     0.530
Mnod_2341
KEGG: mex:Mext_0063 hypothetical protein.
  
     0.465
Mnod_4313
KEGG: met:M446_1476 putative transposase protein.
  
    0.452
Mnod_2243
PFAM: protein of unknown function DUF1080; KEGG: nmu:Nmul_A2104 hypothetical protein.
       0.446
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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